Ramezani, M., Kim, JH., Liu, X, Ren, C, Alothman, A., De-Eknamkul, C., Wilson, M.N., Cubukcu, E., Gilja, V., Komiyama, T., and Kuzum, D. (2024)
“High-density transparent graphene arrays for predicting cellular calcium activity at depth from surface potential recordings.” (PDF)
Nature Nanotechnology, https://doi.org/10.1038/
Ramezani, M., Liu, X., Ren, C., Komiyama, T., Kuzum, D. (2023)
“Processing multimodal neural data and decoding neural dynamics using cross-modality inference.” (PDF)
11th International IEEE/EMBS Conference on Neural Engineering (NER) https://ieeexplore.ieee.org/document/10123822
Sarangi, P., Hattori, R., Komiyama, T., and Pal, P. (2023)
“Super-resolution with Binary Priors: Theory and Algorithms.” (PDF)
IEEE Transactions on Signal Processing, Preprint at https://arxiv.org/pdf/2301.
Chen, Z., Zhang, R., Fang, H.S., Zhang, Y. E., Bal, A., Zhou, H., Rock, R.R., Padilla-Coreano, N., Keyes, L., Zhu, H., Li, Y.L., Komiyama, T., Tye, K.M., and Lu, C. (2023)
“AlphaTracker: A Multi-Animal Tracking and Behavioral Analysis Tool.” (PDF)
Frontiers in Behavioral Neuroscience https://www.frontiersin.org/journals/behavioral-neuroscience/articles/10.3389/fnbeh.2023.1111908/full
Sarangi, P., Hattori, R., Komiyama, T., and Pal, P. (2023)
“Super-resolution with Binary Priors: Theory and Algorithms.” (PDF)
IEEE Transactions on Signal Processing https://ieeexplore.ieee.org/document/10078298
Meamardoost, S., Bhattacharya, M., Hwang, E.J., Ren, C., Wang, L., Mewes, C., Zhang, Y., Komiyama, T., and Gunawan, R. (2022)
“Rewiring Dynamics of Functional Connectome in Motor Cortex during Motor Skill Learning.”
Data Science in Science https://www.tandfonline.com/doi/full/10.1080/26941899.2023.2260431
Liu, F., Meamardoost, S., Gunawan, R., Komiyama, T., Mewes, C., Zhang, Y., Hwang, E.J.*, Wang, L.* (2022)
“Deep Learning for Neural Decoding in Motor Cortex.” (PDF)
Journal of Neural Engineering https://iopscience.iop.org/article/10.1088/1741-2552/ac8fb5
Hattori, R. and Komiyama, T. (2022)
“Longitudinal two-photon calcium imaging with ultra-large cranial window for head-fixed mice” (PDF)
STAR Protocols https://www.sciencedirect.com/science/article/pii/S2666166722002234
Hattori, R. and Komiyama, T. (2022)
“PatchWarp: Corrections of non-uniform image distortions in two-photon calcium imaging data by patchwork affine transformations.” (PDF)
Cell Reports Methods https://www.sciencedirect.com/science/article/pii/S2667237522000637
Hattori, R. and Komiyama, T. (2022)
“Context-dependent persistency as a coding mechanism for robust and widely distributed value coding.” (PDF)
Neuron https://www.sciencedirect.com/science/article/pii/S0896627321008916?via%3Dihub
Ren, C. and Komiyama, T. (2021)
“Wide-field calcium imaging of cortex-wide activity in awake, head-fixed mice.” (PDF)
STAR Protocols https://www.sciencedirect.com/science/article/pii/S2666166721006791?via%3Dihub
Meamardoost, S., Bhattacharya, M., Hwang, E.J., Komiyama, T., Mewes, C., Wang, L., Zhang, Y., Gunawan, R. (2021)
“FARCI: Fast and Robust Connectome Inference.” (PDF)
Brain Sciences https://www.mdpi.com/2076-3425/11/12/1556
Liu, X.*, Ren, C.*, Huang, Z., Wilson, M., Kim, J-H., Lu, Y., Ramezani, M., Komiyama, T., and Kuzum, D. (2021)
“Decoding of cortex-wide brain activity from local recordings of neural potentials.” (PDF)
Journal of Neural Engineering https://iopscience.iop.org/article/10.1088/1741-2552/ac33e7
Ren, C. and Komiyama, T. (2021)
“Characterizing cortex-wide dynamics with wide-field calcium imaging.” (Review) (PDF)
Journal of Neuroscience https://www.jneurosci.org/content/41/19/4160
Liu, X.*, Ren, C.*, Lu, Y.*, Liu, Y., Kim, J., Leutgeb, S., Komiyama, T.#, and Kuzum, D.# (#: co-correspondence) (2021)
“Multimodal neural recordings with Neuro-FITM uncover diverse patterns of cortical–hippocampal interactions.” (PDF)
Nature Neuroscience https://www.nature.com/articles/s41593-021-00841-5
Ding, D., Lu, Y., Zhao, R., Liu, X., De-Eknamkul, C., Ren, C., Mehrsa, A., Komiyama, T., and Kuzum, D. (2020)
“Evaluation of Durability of Transparent Graphene Electrodes Fabricated on Different Flexible Substrates for Chronic in vivo Experiments.” (PDF)
IEEE Transactions on Biomedical Engineering https://ieeexplore.ieee.org/document/9039710
Mitani, A. and Komiyama, T. (2018)
“Real-Time Processing of Two-Photon Calcium Imaging Data Including Lateral Motion Artifact Correction.” (PDF)
Frontiers in Neuroinformatics https://www.frontiersin.org/journals/neuroinformatics/articles/10.3389/fninf.2018.00098/full
Lu, Y., Liu, X., Hattori, R., Ren, C., Komiyama, T., and Kuzum, D. (2018)
“Ultra-low Impedance Graphene Microelectrodes with High Optical Transparency for Simultaneous Deep 2-photon Imaging in Transgenic Mice.” (PDF)
Advanced Functional Materials https://advanced.onlinelibrary.wiley.com/doi/10.1002/adfm.201800002
Liu, Y. Lu, E. Iseri, C. Ren, H. Liu, T. Komiyama and D. Kuzum (2017).
“Transparent artifact-free graphene electrodes for compact closed-loop optogenetics systems.” (PDF)
Electron Devices Meeting (IEDM) https://ieeexplore.ieee.org/document/8268461